Open-source tools

Recent articles

Mouse wearing a white, cube-like device on its head.

WILD platform levels up ability to record brain activity, behavior in nature

The customizable rig combines multimodal recording, onboard processing and neuronal manipulation to power more complex experiments.

By Simon Makin
29 October 2026 | 6 min read

A new atlas of abstracts visualizes the field of human brain mapping—where does your work fit?

Satrajit Ghosh talks to Mac Shine about a community-built tool that places every abstract from the 2026 Organization for Human Brain Mapping meeting inside a semantic map of the broader neuroscience literature. Finding your neighbors in that space might matter more than you think.

By Mac Shine
9 June 2026 | 40 min watch
Research image of zebrafish brain activity.

Nearly 400 compounds affect behaviors tied to autism-linked genes in zebrafish

Estropipate, paclitaxel and levocarnitine altered behaviors tied to SCN2A and DYRK1A variants specifically, a new open-source platform revealed.

By Charles Q. Choi
16 April 2026 | 4 min read
Research image of the human dorsal root ganglion.

‘Unprecedented’ dorsal root ganglion atlas captures 22 types of human sensory neurons

The atlas also offers up molecular and cellular targets for new pain therapies.

By Calli McMurray
23 December 2025 | 5 min read
Research image of organoids derived from stem cell lines from people with intellectual disability, polymicroglia or microcephaly, alongside a control organoid.

New organoid atlas unveils four neurodevelopmental signatures

The comprehensive resource details data on microcephaly, polymicrogyria, epilepsy and intellectual disability from 352 people.

By Diana Kwon
17 December 2025 | 4 min read
Complex stack of rectangular prisms.

Neurophysiology data-sharing system faces funding cliff

After the primary grant supporting Neurodata Without Borders ends in March 2026, the platform may no longer be maintained or kept up to date.

By Lauren Schneider
17 November 2025 | 5 min read
A crumpled sheet of paper with a fly printed on it.

FlyBase funding squashed amid Harvard grant terminations

The team behind the Drosophila genetics database is now requesting donations from labs to keep the resource afloat.

By Calli McMurray
4 June 2025 | 4 min read
Photograph of the BRIDGE team and students visiting a laboratory.

Sharing Africa’s brain data: Q&A with Amadi Ihunwo

These data are “virtually mandatory” to advance neuroscience, says Ihunwo, a co-investigator of the Brain Research International Data Governance & Exchange (BRIDGE) initiative, which seeks to develop a global framework for sharing, using and protecting neuroscience data.

By Lauren Schenkman
20 May 2025 | 6 min read
A young child in a blue shirt sits in a red chair and speaks to an adult at the edge of the frame.

AI tool estimates social ability by analyzing speech

The system’s code and training data—drawn from one of the largest databases of speech recordings from autistic people—are openly available.

By Charles Q. Choi
13 February 2025 | 5 min read
Illustration of three figures standing in front of a grid of dots and a world map.

The S-index Challenge: Develop a metric to quantify data-sharing success

The NIH-sponsored effort aims to help incentivize scientists to share data. But many barriers to the widespread adoption of useful data-sharing remain.

By Loren Frank
8 October 2024 | 6 min read

Explore more from The Transmitter

Research figure of fly neurons transforming taste information into movements.

Fly taste connectome traces paths from sensation to action

The map—the first of its kind for an animal more complex than Caenorhabditis elegans—gives neuroscientists a trove of testable hypotheses about how neuronal circuits guide feeding behaviors.

By Lauren Schenkman
30 October 2026 | 5 min read
Gerry Fischbach at a podium.

Remembering Gerry Fischbach, ‘orchestra conductor’ who brought scientists together

Fischbach, who died 25 October, elucidated the dynamic changes in neuromuscular junctions. Beyond the lab, he shaped careers, academic departments and scientific societies.

By Claudia López Lloreda
29 October 2026 | 8 min read

The relationship between structure and function in cortical networks

Michael Reimann explains how the shape of neurons puts strong constraints on how they are wired in a network, and how this affects their structure-function relationships.

By Gaute Einevoll
28 October 2026 | 138 min listen