Open-source tools

Recent articles

Illustration of three figures standing in front of a grid of dots and a world map.

The S-index Challenge: Develop a metric to quantify data-sharing success

The NIH-sponsored effort aims to help incentivize scientists to share data. But many barriers to the widespread adoption of useful data-sharing remain.

By Loren Frank
8 October 2024 | 6 min listen
Research image of a variety of brain atlases.

New ‘decoder’ tool translates functional neuroimaging terms across labs

The compendium of brain-parcellation atlases makes it possible to compare large-scale network data, which often involves different and overlapping network names.

By Holly Barker
23 July 2024 | 4 min read
Research image of data from electrode arrays inserted into mice.

10 standards for brain electrode-array recordings enhance reproducibility

Electrophysiology findings can vary widely from lab to lab, even among those using identical protocols. New guidelines set forth in a preprint should help.

By Elissa Welle
12 July 2024 | 5 min read
Image of neural activity in a mouse as seen through the Miniscope.

Designing an open-source microscope

Funding for the development of open-source tools is on the rise, but support for their maintenance and dissemination, both crucial for their meaningful uptake, remains a major challenge.

By Daniel Aharoni
17 June 2024 | 6 min read

Getting musical to spot patterns in whole-brain imaging data: Q&A with Elizabeth Hillman

The new technique takes advantage of humans’ “extraordinary” sensory processing abilities, Hillman says.

By Calli McMurray
21 February 2024 | 0 min watch

Explore more from The Transmitter

Research image of a mossy fiber terminal in the cerebellar granule cell layer.

Cerebellar SHANK3; telehealth coaching for caregivers; psychedelics

Here is a roundup of autism-related news and research spotted around the web for the last two weeks of December.

By Jill Adams
2 January 2025 | 2 min read
View out a window onto an open plaza in Krakow.

My hope for displaced Ukrainian children with autism, an update

The largest ongoing refugee crisis in Europe has overwhelmed humanitarian agencies. Meeting the needs of families affected by autism has not been a priority.

By Chrystina Dolyniuk
2 January 2025 | 6 min read
Illustration of distorted lines of different colors being pulled into a box where they are smoothed in a single multicolored line.

The Transmitter’s favorite essays and columns of 2024

From sex differences in Alzheimer’s disease to enduring citation bias, experts weighed in on important scientific and practical issues in neuroscience.

By The Transmitter
23 December 2024 | 2 min read