Modeling

Recent articles

A worm made of circuitry.

Whole-brain, bottom-up neuroscience: The time for it is now

Applying new tools to entire brains, starting with C. elegans, offers the opportunity to uncover how molecules work together to generate neural physiology and how neurons work together to generate behavior.

By Edward Boyden, Konrad Körding
20 October 2025 | 9 min read
Illustration of a series of shapes, with a few resembling human eyes.

The visual system’s lingering mystery: Connecting neural activity and perception

Figuring out how the brain uses information from visual neurons may require new tools. I asked 10 neuroscientists what experimental and conceptual methods they think we’re missing.

By Grace Lindsay
13 October 2025 | 24 min read
Composite of Autism Data Science Initiative researcher headshots.

Meet the Autism Data Science Initiative grantees

The awarded projects plan to study gene-and-environment interactions in people, stem cells and organoids, as well as predictors of positive life outcomes in autistic youth and adults.

By Calli McMurray
3 October 2025 | 12 min read
Research image of neuron organization in c elegans.

Worms help untangle brain structure/function mystery

The synaptic connectome of most animals bears little resemblance to functional brain maps, but it can still predict neuronal activity, according to two preprints that tackle the puzzle in C. elegans

By Holly Barker
29 August 2025 | 7 min read
Computer-generated illustration of a brain in a broken jar.

Breaking the jar: Why NeuroAI needs embodiment

Brain function is inexorably shaped by the body. Embracing this fact will benefit computational models of real brain function, as well as the design of artificial neural networks.

By Bing Wen Brunton, John Tuthill
21 July 2025 | 9 min read
Research image of mouse brain slices.

Some dopamine neurons signal default behaviors to reinforce habits

Movement-sensing neurons that target the striatum influence a mouse’s choice of action by favoring routine.

By Holly Barker
11 June 2025 | 4 min read
Illustration of synapse-like threads connecting in various ways.

Learning in living mice defies classic synaptic plasticity rule

Donald Hebb’s theory—memorably summarized as “cells that fire together, wire together”—does not explain the shifting hippocampal connections in mice learning to navigate a virtual environment, according to a new study.

By Sydney Wyatt
28 May 2025 | 5 min read

Escaping groupthink: What animals’ behavioral quirks reveal about the brain

Neuroscientists have long ignored the variability in animals’ behavioral responses in favor of studying differences across groups. But work on the brain differences that underlie that variability is beginning to pay off.

By Angie Voyles Askham
23 May 2025 | 0 min watch
Tic-tac-toe board with pills representing x’s and o’s.

Basic pain research ‘is not working’: Q&A with Steven Prescott and Stéphanie Ratté

Prescott and Ratté critique the clinical relevance of preclinical studies in the field and highlight areas for improvement.

By Sydney Wyatt
18 April 2025 | 7 min read

Gabriele Scheler reflects on the interplay between language, thought and AI

She discusses how verbal thought shapes cognition, why inner speech is foundational to human intelligence and what current artificial-intelligence models get wrong about language.

By Paul Middlebrooks
26 March 2025 | 96 min listen

Explore more from The Transmitter

Going against the gut: Q&A with Kevin Mitchell on the autism-microbiome theory

A new review of 15 years of studies on the connection between the microbiome and autism reveals widespread statistical and conceptual errors.

By Lauren Schenkman
13 November 2025 | 7 min read
Research image of fMRI scans on a black background.

Timing tweak turns trashed fMRI scans into treasure

Leveraging start-up “dummy scans,” which are typically discarded in imaging analyses, can shorten an experiment’s length and make data collection more efficient, a new study reveals.

By Angie Voyles Askham
13 November 2025 | 6 min read
Abstract flowing shapes.

Perimenopause: An important—and understudied—transition for the brain

Many well-known perimenopause symptoms arise in the brain, but we still know little about the specific mechanisms at play. More research—in both animals and humans—is essential.

By Marija Kundakovic
12 November 2025 | 6 min read

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